I don't think there is a defined process that is being sidestepped. I think the residents expect to be able to write their neighborhood plan -- at their convenience -- before any development is considered. Looks like they want to be able to require any development to include affordable housing but that's not a requirement at the moment.
All the planning department does is try to steer projects to a point where they "fit" the strategic plan. The planning commission is the nuts and bolts of making sure the project fits the legal requirements of the city code while considering waivers and so on. So the "strategic planning" people can say, you have to have affordable housing and then the developer goes to the planning commission and probably gets a waiver to reduce or eliminate it, within reason, or something.